IL_4D67_151
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UAAU*AUCGA
- Length
- 9 nucleotides
- Bulged bases
- 4D67|1|3|G|94
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D67_151 not in the Motif Atlas
- Geometric match to IL_3NPQ_006
- Geometric discrepancy: 0.3841
- The information below is about IL_3NPQ_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_96332.5
- Basepair signature
- cWW-cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
4D67|1|3|U|64
4D67|1|3|A|65
4D67|1|3|A|66
4D67|1|3|U|67
*
4D67|1|3|A|91
4D67|1|3|U|92
4D67|1|3|C|93
4D67|1|3|G|94
4D67|1|3|A|95
Current chains
- Chain 3
- 5.8S RRNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y
- 60S RIBOSOMAL PROTEIN L26
- Chain h
- 60S RIBOSOMAL PROTEIN L35
- Chain j
- 60S RIBOSOMAL PROTEIN L37
Coloring options: