IL_4D67_156
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UUAGUAC*GGAAUA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D67_156 not in the Motif Atlas
- Geometric match to IL_4WF9_100
- Geometric discrepancy: 0.3603
- The information below is about IL_4WF9_100
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.4
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4D67|1|4|U|72
4D67|1|4|U|73
4D67|1|4|A|74
4D67|1|4|G|75
4D67|1|4|U|76
4D67|1|4|A|77
4D67|1|4|C|78
*
4D67|1|4|G|98
4D67|1|4|G|99
4D67|1|4|A|100
4D67|1|4|A|101
4D67|1|4|U|102
4D67|1|4|A|103
Current chains
- Chain 4
- 5S RRNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 60S RIBOSOMAL PROTEIN L5
- Chain F
- 60S RIBOSOMAL PROTEIN L7
- Chain I
- 60S RIBOSOMAL PROTEIN L10
- Chain S
- 60S RIBOSOMAL PROTEIN L18A
- Chain T
- 60S RIBOSOMAL PROTEIN L21
Coloring options: