3D structure

PDB id
4D67 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
Experimental method
ELECTRON MICROSCOPY
Resolution
9 Å

Loop

Sequence
GGAAGUCGG*CUGUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4D67_188 not in the Motif Atlas
Homologous match to IL_8P9A_305
Geometric discrepancy: 0.1342
The information below is about IL_8P9A_305
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22854.4
Basepair signature
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
Number of instances in this motif group
7

Unit IDs

4D67|1|2|G|2824
4D67|1|2|G|2825
4D67|1|2|A|2826
4D67|1|2|A|2827
4D67|1|2|G|2828
4D67|1|2|U|2829
4D67|1|2|C|2830
4D67|1|2|G|2831
4D67|1|2|G|2832
*
4D67|1|2|C|3806
4D67|1|2|U|3807
4D67|1|2|G|3808
4D67|1|2|U|3809
4D67|1|2|C|3810

Current chains

Chain 2
28S RRNA

Nearby chains

Chain B
60S RIBOSOMAL PROTEIN L3
Chain V
60S RIBOSOMAL PROTEIN L23

Coloring options:


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