IL_4D67_188
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GGAAGUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D67_188 not in the Motif Atlas
- Homologous match to IL_8P9A_305
- Geometric discrepancy: 0.1342
- The information below is about IL_8P9A_305
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22854.4
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 7
Unit IDs
4D67|1|2|G|2824
4D67|1|2|G|2825
4D67|1|2|A|2826
4D67|1|2|A|2827
4D67|1|2|G|2828
4D67|1|2|U|2829
4D67|1|2|C|2830
4D67|1|2|G|2831
4D67|1|2|G|2832
*
4D67|1|2|C|3806
4D67|1|2|U|3807
4D67|1|2|G|3808
4D67|1|2|U|3809
4D67|1|2|C|3810
Current chains
- Chain 2
- 28S RRNA
Nearby chains
- Chain B
- 60S RIBOSOMAL PROTEIN L3
- Chain V
- 60S RIBOSOMAL PROTEIN L23
Coloring options: