IL_4D67_197

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

ACAUUUG*UACCAU

Length

13 nucleotides

Bulged bases

4D67|1|2|C|4630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D67|1|2|A|4584
4D67|1|2|C|4585
4D67|1|2|A|4586
4D67|1|2|U|4587
4D67|1|2|U|4588
4D67|1|2|U|4589
4D67|1|2|G|4590
*
4D67|1|2|U|4628
4D67|1|2|A|4629
4D67|1|2|C|4630
4D67|1|2|C|4631
4D67|1|2|A|4632
4D67|1|2|U|4633

Current chains

Chain 2

28S RRNA

Nearby chains

Chain B

60S RIBOSOMAL PROTEIN L3

Chain V

60S RIBOSOMAL PROTEIN L23

Chain W

60S RIBOSOMAL PROTEIN L24