IL_4D67_198

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UGCUU*AAUGGGG

Length

12 nucleotides

Bulged bases

4D67|1|2|A|4616, 4D67|1|2|U|4617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D67|1|2|U|4598
4D67|1|2|G|4599
4D67|1|2|C|4600
4D67|1|2|U|4601
4D67|1|2|U|4602
*
4D67|1|2|A|4615
4D67|1|2|A|4616
4D67|1|2|U|4617
4D67|1|2|G|4618
4D67|1|2|G|4619
4D67|1|2|G|4620
4D67|1|2|G|4621

Current chains

Chain 2

28S RRNA

Nearby chains

Chain R

60S RIBOSOMAL PROTEIN L19

Chain W

60S RIBOSOMAL PROTEIN L24

Chain d

60S RIBOSOMAL PROTEIN L31