IL_4D67_209

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CCGCUCCCCGGCGCCG*CGCGCGCCCGG

Length

27 nucleotides

Bulged bases

4D67|1|2|G|254, 4D67|1|2|C|257

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D67|1|2|C|164
4D67|1|2|C|165
4D67|1|2|G|166
4D67|1|2|C|167
4D67|1|2|U|168
4D67|1|2|C|169
4D67|1|2|C|170
4D67|1|2|C|171
4D67|1|2|C|172
4D67|1|2|G|173
4D67|1|2|G|174
4D67|1|2|C|175
4D67|1|2|G|176
4D67|1|2|C|177
4D67|1|2|C|178
4D67|1|2|G|179
*
4D67|1|2|C|249
4D67|1|2|G|250
4D67|1|2|C|251
4D67|1|2|G|252
4D67|1|2|C|253
4D67|1|2|G|254
4D67|1|2|C|255
4D67|1|2|C|256
4D67|1|2|C|257
4D67|1|2|G|258
4D67|1|2|G|259

Current chains

Chain 2

28S RRNA

Nearby chains

Chain L

60S RIBOSOMAL PROTEIN L13

Chain h

60S RIBOSOMAL PROTEIN L35