IL_4D67_217

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CCUUGAAG*UGGAGG

Length

14 nucleotides

Bulged bases

4D67|1|2|U|2281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D67|1|2|C|2278
4D67|1|2|C|2279
4D67|1|2|U|2280
4D67|1|2|U|2281
4D67|1|2|G|2282
4D67|1|2|A|2283
4D67|1|2|A|2284
4D67|1|2|G|2285
*
4D67|1|2|U|2305
4D67|1|2|G|2306
4D67|1|2|G|2307
4D67|1|2|A|2308
4D67|1|2|G|2309
4D67|1|2|G|2310

Current chains

Chain 2

28S RRNA

Nearby chains

Chain 3

5.8S ribosomal RNA; 5.8S rRNA

Chain C

60S RIBOSOMAL PROTEIN L4

Chain Y

60S RIBOSOMAL PROTEIN L26

Chain e

60S RIBOSOMAL PROTEIN L32