IL_4DR1_047

3D structure

PDB id

4DR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the apo 30S ribosomal subunit from Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CG*CUG

Length

5 nucleotides

Bulged bases

4DR1|1|A|U|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DR1_047 not in the Motif Atlas

Homologous match to IL_6CZR_156

Geometric discrepancy: 0.2497

The information below is about IL_6CZR_156

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

4DR1|1|A|C|1060
4DR1|1|A|G|1061
*
4DR1|1|A|C|1195
4DR1|1|A|U|1196
4DR1|1|A|G|1197

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain E

30S ribosomal protein S5

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14