3D structure

PDB id
4DR1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the apo 30S ribosomal subunit from Thermus thermophilus (HB8)
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
GGAGCG*CGUGAC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4DR1_077 not in the Motif Atlas
Geometric match to IL_4N0T_001
Geometric discrepancy: 0.3941
The information below is about IL_4N0T_001
Detailed Annotation
Double sheared; A in syn; two near cWW pairs
Broad Annotation
Double sheared; A in syn; two near cWW pairs
Motif group
IL_71294.3
Basepair signature
cWW-L-R-L-R-L-R-L-R-cWW
Number of instances in this motif group
2

Unit IDs

4DR1|1|A|G|1416
4DR1|1|A|G|1417
4DR1|1|A|A|1418
4DR1|1|A|G|1419
4DR1|1|A|C|1420
4DR1|1|A|G|1421
*
4DR1|1|A|C|1479
4DR1|1|A|G|1480
4DR1|1|A|U|1481
4DR1|1|A|G|1482
4DR1|1|A|A|1483
4DR1|1|A|C|1484

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
30S ribosomal protein S12

Coloring options:


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