IL_4DR1_077
3D structure
- PDB id
- 4DR1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the apo 30S ribosomal subunit from Thermus thermophilus (HB8)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GGAGCG*CGUGAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4DR1_077 not in the Motif Atlas
- Geometric match to IL_4N0T_001
- Geometric discrepancy: 0.3941
- The information below is about IL_4N0T_001
- Detailed Annotation
- Double sheared; A in syn; two near cWW pairs
- Broad Annotation
- Double sheared; A in syn; two near cWW pairs
- Motif group
- IL_71294.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
4DR1|1|A|G|1416
4DR1|1|A|G|1417
4DR1|1|A|A|1418
4DR1|1|A|G|1419
4DR1|1|A|C|1420
4DR1|1|A|G|1421
*
4DR1|1|A|C|1479
4DR1|1|A|G|1480
4DR1|1|A|U|1481
4DR1|1|A|G|1482
4DR1|1|A|A|1483
4DR1|1|A|C|1484
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
Coloring options: