3D structure

PDB id
4DR2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with multiple copies of paromomycin molecules bound
Experimental method
X-RAY DIFFRACTION
Resolution
3.25 Å

Loop

Sequence
GAGUAG*CGCAGAUAC
Length
15 nucleotides
Bulged bases
4DR2|1|A|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4DR2_031 not in the Motif Atlas
Homologous match to IL_4LFB_031
Geometric discrepancy: 0.0441
The information below is about IL_4LFB_031
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_95727.1
Basepair signature
cWW-L-tSH-L-tHW-tHS-R-cWW-L
Number of instances in this motif group
1

Unit IDs

4DR2|1|A|G|683
4DR2|1|A|A|684
4DR2|1|A|G|685
4DR2|1|A|U|686
4DR2|1|A|A|687
4DR2|1|A|G|688
*
4DR2|1|A|C|699
4DR2|1|A|G|700
4DR2|1|A|C|701
4DR2|1|A|A|702
4DR2|1|A|G|703
4DR2|1|A|A|704
4DR2|1|A|U|705
4DR2|1|A|A|706
4DR2|1|A|C|707

Current chains

Chain A
16S rRNA

Nearby chains

Chain K
30S ribosomal protein S11
Chain R
30S ribosomal protein S18

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.11 s