3D structure

PDB id
4DR2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with multiple copies of paromomycin molecules bound
Experimental method
X-RAY DIFFRACTION
Resolution
3.25 Å

Loop

Sequence
(5MC)AC*GAAG
Length
7 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4DR2_071 not in the Motif Atlas
Homologous match to IL_4LFB_070
Geometric discrepancy: 0.1082
The information below is about IL_4LFB_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_31531.3
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
13

Unit IDs

4DR2|1|A|5MC|1407
4DR2|1|A|A|1408
4DR2|1|A|C|1409
*
4DR2|1|A|G|1491
4DR2|1|A|A|1492
4DR2|1|A|A|1493
4DR2|1|A|G|1494

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
30S ribosomal protein S12

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2032 s