Motif IL_29925.3 Version IL_29925.3 of this group appears in releases 4.7 to 4.7
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9H3G_236 | 9H3G | 0.2968 | 0 | h1 | SSU rRNA | G | 1758 | A | 1759 | A | 1760 | G | 1761 | * | C | 1646 | G | 1647 | C | 1648 | cWW | cWW | |
| 2 | IL_4ZC7_003 | 4ZC7 | 0.3338 | 0 | Decoding loop related | A+B | RNA duplex | A | 16 | A | 17 | A | 18 | G | 19 | * | C | 30 | G | 31 | U | 32 | ncWW | cWW |
| 3 | IL_2O3X_002 | 2O3X | 0.2900 | 0 | Decoding loop related | B+A | RNA (23-mer) | G | 39 | A | 40 | A | 41 | G | 42 | * | C | 7 | A | 8 | C | 9 | cWW | cWW |
| 4 | IL_2ET8_002 | 2ET8 | 0.2450 | 0 | Decoding loop related | B+A | RNA (22-mer) | G | 38 | A | 39 | A | 40 | G | 41 | * | C | 6 | A | 7 | C | 8 | cWW | cWW |
| 5 | IL_4LFB_070 | 4LFB | 0.0000 | 0 | A | SSU rRNA | G | 1491 | A | 1492 | A | 1493 | G | 1494 | * | 5MC | 1407 | A | 1408 | C | 1409 | cWW | cWW | |
| 6 | IL_4PDQ_002 | 4PDQ | 0.2009 | 0 | B+A | RNA (23-mer) | G | 39 | A | 40 | A | 41 | G | 42 | * | C | 7 | A | 8 | C | 9 | cWW | cWW | |
| 7 | IL_3C3Z_003 | 3C3Z | 0.2372 | 0 | Decoding loop related | B+A | HIV-1 subtype F genomic RNA | G | 7 | A | 8 | A | 9 | G | 10 | * | C | 15 | A | 16 | C | 17 | cWW | cWW |
| 8 | IL_1ZZ5_001 | 1ZZ5 | 0.1786 | 0 | Decoding loop related | A+B | RNA (15-mer) + RNA (14-mer) | G | 7 | A | 8 | A | 9 | G | 10 | * | C | 26 | A | 27 | C | 28 | cWW | cWW |
| 9 | IL_1T0E_001 | 1T0E | 0.3266 | 0 | Decoding loop related | A+C | RNA (18-mer) + RNA (17-mer) | G | 7 | A | 8||A | A | 9||A | G | 10||A | * | C | 16 | A | 17 | C | 18 | cWW | cWW |
| 10 | IL_1ZX7_005 | 1ZX7 | 0.4626 | 0 | Decoding loop related | E+F | RNA (15-mer) + RNA (14-mer) | G | 7 | A | 8 | A | 9 | G | 10 | * | C | 26 | A | 27 | C | 28 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAG*CAC | 6 |
| GAAG*CGC | 1 |
| AAAG*CGU | 1 |
| GAAG*(5MC)AC | 1 |
| CAC*GAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*A | 7 |
| AA*G | 2 |
| A*AA | 1 |
Release history
| Release | 4.7 |
|---|---|
| Date | 2026-02-25 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Decoding loop related (7)
- (3)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.10 | Avg 0.32 | Max 0.59
Coloring options: