3D structure

PDB id
4DR3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with streptomycin bound
Experimental method
X-RAY DIFFRACTION
Resolution
3.35 Å

Loop

Sequence
GGAAUU*AGGAAC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4DR3_031 not in the Motif Atlas
Homologous match to IL_4LFB_030
Geometric discrepancy: 0.0405
The information below is about IL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04668.2
Basepair signature
cWW-cWW-cWW-L-R-L-R-cWW
Number of instances in this motif group
8

Unit IDs

4DR3|1|A|G|673
4DR3|1|A|G|674
4DR3|1|A|A|675
4DR3|1|A|A|676
4DR3|1|A|U|677
4DR3|1|A|U|678
*
4DR3|1|A|A|712
4DR3|1|A|G|713
4DR3|1|A|G|714
4DR3|1|A|A|715
4DR3|1|A|A|716
4DR3|1|A|C|717

Current chains

Chain A
16S rRNA

Nearby chains

Chain F
30S ribosomal protein S6
Chain K
30S ribosomal protein S11
Chain R
30S ribosomal protein S18

Coloring options:


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