IL_4DR4_019
3D structure
- PDB id
- 4DR4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.97 Å
Loop
- Sequence
- GAAACC*GACUGAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4DR4_019 not in the Motif Atlas
- Geometric match to IL_4LFB_019
- Geometric discrepancy: 0.0988
- The information below is about IL_4LFB_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31561.1
- Basepair signature
- cWW-L-R-tWH-tWH-L-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
4DR4|1|A|G|450
4DR4|1|A|A|451
4DR4|1|A|A|452
4DR4|1|A|A|453
4DR4|1|A|C|454
4DR4|1|A|C|455
*
4DR4|1|A|G|477
4DR4|1|A|A|478
4DR4|1|A|C|479
4DR4|1|A|U|480
4DR4|1|A|G|481
4DR4|1|A|A|482
4DR4|1|A|C|483
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain P
- 30S ribosomal protein S16
Coloring options: