3D structure

PDB id
4DR4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound
Experimental method
X-RAY DIFFRACTION
Resolution
3.97 Å

Loop

Sequence
GCA*UUCCC
Length
8 nucleotides
Bulged bases
4DR4|1|A|C|934
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4DR4_037 not in the Motif Atlas
Homologous match to IL_5J7L_041
Geometric discrepancy: 0.1264
The information below is about IL_5J7L_041
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_47078.3
Basepair signature
cWW-cWS-L-cWW-L
Number of instances in this motif group
4

Unit IDs

4DR4|1|A|G|933
4DR4|1|A|C|934
4DR4|1|A|A|935
*
4DR4|1|A|U|1380
4DR4|1|A|U|1381
4DR4|1|A|C|1382
4DR4|1|A|C|1383
4DR4|1|A|C|1384

Current chains

Chain A
16S rRNA

Nearby chains

Chain G
30S ribosomal protein S7
Chain I
30S ribosomal protein S9

Coloring options:


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