IL_4DR4_041

3D structure

PDB id

4DR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

CCGG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DR4_041 not in the Motif Atlas

Geometric match to IL_4EYA_010

Geometric discrepancy: 0.2963

The information below is about IL_4EYA_010

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

4DR4|1|A|C|1007
4DR4|1|A|C|1008
4DR4|1|A|G|1009
4DR4|1|A|G|1010
*
4DR4|1|A|C|1019
4DR4|1|A|U|1020
4DR4|1|A|G|1021
4DR4|1|A|G|1022

Current chains

Chain A

16S rRNA

Nearby chains