IL_4DR4_055

3D structure

PDB id

4DR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

4DR4|1|A|A|1503

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DR4_055 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2075

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

4DR4|1|A|C|1399
4DR4|1|A|5MC|1400
4DR4|1|A|G|1401
*
4DR4|1|A|C|1501
4DR4|1|A|A|1502
4DR4|1|A|A|1503
4DR4|1|A|G|1504

Current chains

Chain A

16S rRNA

Nearby chains

Chain V

5'-R(*UP*UP*U)-3'