IL_4DR5_033

3D structure

PDB id

4DR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered cognate transfer RNA anticodon stem-loop and streptomycin bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DR5_033 not in the Motif Atlas

Homologous match to IL_4LFB_032

Geometric discrepancy: 0.0756

The information below is about IL_4LFB_032

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.3

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

4DR5|1|A|G|774
4DR5|1|A|G|775
4DR5|1|A|G|776
4DR5|1|A|A|777
4DR5|1|A|G|778
*
4DR5|1|A|U|804
4DR5|1|A|C|805

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

30S ribosomal protein S11