IL_4DR6_062
3D structure
- PDB id
- 4DR6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position and streptomycin bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CCAC*GG(PSU)G
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4DR6_062 not in the Motif Atlas
- Geometric match to IL_3WBM_003
- Geometric discrepancy: 0.1957
- The information below is about IL_3WBM_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
4DR6|1|A|C|1533
4DR6|1|A|C|1534
4DR6|1|A|A|1535
4DR6|1|A|C|1536
*
4DR6|1|a|G|36
4DR6|1|a|G|37
4DR6|1|a|PSU|38
4DR6|1|a|G|39
Current chains
- Chain A
- 16S rRNA
- Chain a
- 5'-R(P*CP*UP*UP*GP*AP*GP*GP*(PSU)P*GP*GP*U)-3'
Nearby chains
- Chain K
- 30S ribosomal protein S11
- Chain R
- 30S ribosomal protein S18
Coloring options: