3D structure

PDB id
4DR7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound
Experimental method
X-RAY DIFFRACTION
Resolution
3.75 Å

Loop

Sequence
GAAACC*GACUGAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4DR7_021 not in the Motif Atlas
Geometric match to IL_4LFB_019
Geometric discrepancy: 0.111
The information below is about IL_4LFB_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_31561.1
Basepair signature
cWW-L-R-tWH-tWH-L-R-L-cWW
Number of instances in this motif group
1

Unit IDs

4DR7|1|A|G|450
4DR7|1|A|A|451
4DR7|1|A|A|452
4DR7|1|A|A|453
4DR7|1|A|C|454
4DR7|1|A|C|455
*
4DR7|1|A|G|477
4DR7|1|A|A|478
4DR7|1|A|C|479
4DR7|1|A|U|480
4DR7|1|A|G|481
4DR7|1|A|A|482
4DR7|1|A|C|483

Current chains

Chain A
16S rRNA

Nearby chains

Chain P
30S ribosomal protein S16

Coloring options:


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