3D structure

PDB id
4DR7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound
Experimental method
X-RAY DIFFRACTION
Resolution
3.75 Å

Loop

Sequence
UGAAAGAC*GGGGAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4DR7_028 not in the Motif Atlas
Homologous match to IL_4LFB_026
Geometric discrepancy: 0.1619
The information below is about IL_4LFB_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

4DR7|1|A|U|605
4DR7|1|A|G|606
4DR7|1|A|A|607
4DR7|1|A|A|608
4DR7|1|A|A|609
4DR7|1|A|G|610
4DR7|1|A|A|611
4DR7|1|A|C|612
*
4DR7|1|A|G|628
4DR7|1|A|G|629
4DR7|1|A|G|630
4DR7|1|A|G|631
4DR7|1|A|A|632
4DR7|1|A|G|633

Current chains

Chain A
16S rRNA

Nearby chains

Chain D
30S ribosomal protein S4
Chain H
30S ribosomal protein S8
Chain P
30S ribosomal protein S16

Coloring options:


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