IL_4DR7_033

3D structure

PDB id

4DR7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

4DR7|1|A|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DR7_033 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.0845

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4DR7|1|A|G|683
4DR7|1|A|A|684
4DR7|1|A|G|685
4DR7|1|A|U|686
4DR7|1|A|A|687
4DR7|1|A|G|688
*
4DR7|1|A|C|699
4DR7|1|A|G|700
4DR7|1|A|C|701
4DR7|1|A|A|702
4DR7|1|A|G|703
4DR7|1|A|A|704
4DR7|1|A|U|705
4DR7|1|A|A|706
4DR7|1|A|C|707

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

30S ribosomal protein S11