3D structure

PDB id
4DR7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound
Experimental method
X-RAY DIFFRACTION
Resolution
3.75 Å

Loop

Sequence
GG*UCAGC
Length
7 nucleotides
Bulged bases
4DR7|1|A|C|1200, 4DR7|1|A|A|1201
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4DR7_045 not in the Motif Atlas
Homologous match to IL_5J7L_048
Geometric discrepancy: 0.1609
The information below is about IL_5J7L_048
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_95583.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
11

Unit IDs

4DR7|1|A|G|1057
4DR7|1|A|G|1058
*
4DR7|1|A|U|1199
4DR7|1|A|C|1200
4DR7|1|A|A|1201
4DR7|1|A|G|1202
4DR7|1|A|C|1203

Current chains

Chain A
16S rRNA

Nearby chains

Chain C
30S ribosomal protein S3
Chain J
30S ribosomal protein S10
Chain N
30S ribosomal protein S14
Chain W
5'-R(*GP*CP*CP*UP*GP*GP*AP*AP*AP*GP*(PSU))-3'

Coloring options:


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