3D structure

PDB id
4DR7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound
Experimental method
X-RAY DIFFRACTION
Resolution
3.75 Å

Loop

Sequence
CUA*UAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary: CUA,UAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4DR7_059 not in the Motif Atlas
Homologous match to IL_4LFB_061
Geometric discrepancy: 0.1708
The information below is about IL_4LFB_061
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_86319.3
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
269

Unit IDs

4DR7|1|A|C|1426
4DR7|1|A|U|1427
4DR7|1|A|A|1428
*
4DR7|1|A|U|1472
4DR7|1|A|A|1473
4DR7|1|A|G|1474

Current chains

Chain A
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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