IL_4DS6_011

3D structure

PDB id

4DS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a group II intron in the pre-catalytic state

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CAUAGUAC*GGAAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DS6_011 not in the Motif Atlas

Geometric match to IL_3IGI_011

Geometric discrepancy: 0.1858

The information below is about IL_3IGI_011

Detailed Annotation

8x6 Sarcin-Ricin with inserted A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_61286.1

Basepair signature

cWW-L-R-L-R-L-tWH-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4DS6|1|A|C|296
4DS6|1|A|A|297
4DS6|1|A|U|298
4DS6|1|A|A|299
4DS6|1|A|G|300
4DS6|1|A|U|301
4DS6|1|A|A|302
4DS6|1|A|C|303
*
4DS6|1|A|G|316
4DS6|1|A|G|317
4DS6|1|A|A|318
4DS6|1|A|A|319
4DS6|1|A|G|320
4DS6|1|A|G|321

Current chains

Chain A

Mutant Group IIC Intron

Nearby chains