IL_4DUY_008

3D structure

PDB id

4DUY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

4DUY|1|A|G|129|||A, 4DUY|1|A|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DUY_008 not in the Motif Atlas

Homologous match to IL_4LFB_007

Geometric discrepancy: 0.0971

The information below is about IL_4LFB_007

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_33761.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

4DUY|1|A|U|129
4DUY|1|A|G|129|||A
4DUY|1|A|A|130
4DUY|1|A|C|131
*
4DUY|1|A|G|231
4DUY|1|A|G|232

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

ribosomal protein S16

Chain Q

ribosomal protein S17

Chain T

ribosomal protein S20