IL_4DUY_021

3D structure

PDB id

4DUY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DUY_021 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.0572

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

4DUY|1|A|C|504
4DUY|1|A|G|505
4DUY|1|A|G|506
4DUY|1|A|C|507
4DUY|1|A|C|508
4DUY|1|A|A|509
4DUY|1|A|A|510
4DUY|1|A|C|511
*
4DUY|1|A|G|540
4DUY|1|A|G|541

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

ribosomal protein S4

Chain E

ribosomal protein S5

Chain L

ribosomal protein S12