IL_4DUY_022

3D structure

PDB id

4DUY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4DUY|1|A|A|532, 4DUY|1|A|U|534

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DUY_022 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.0986

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4DUY|1|A|G|515
4DUY|1|A|PSU|516
4DUY|1|A|G|517
4DUY|1|A|C|518
4DUY|1|A|C|519
4DUY|1|A|A|520
4DUY|1|A|G|521
*
4DUY|1|A|C|528
4DUY|1|A|G|529
4DUY|1|A|G|530
4DUY|1|A|U|531
4DUY|1|A|A|532
4DUY|1|A|A|533
4DUY|1|A|U|534
4DUY|1|A|A|535
4DUY|1|A|C|536

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

ribosomal protein S3

Chain D

ribosomal protein S4

Chain L

ribosomal protein S12