IL_4DUY_041

3D structure

PDB id

4DUY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

UAG*CUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UAG,CUA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DUY_041 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.1645

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4DUY|1|A|U|1000
4DUY|1|A|A|1001
4DUY|1|A|G|1002
*
4DUY|1|A|C|1039
4DUY|1|A|U|1040
4DUY|1|A|A|1041

Current chains

Chain A

16S rRNA

Nearby chains