IL_4DUY_047

3D structure

PDB id

4DUY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DUY_047 not in the Motif Atlas

Homologous match to IL_4LFB_047

Geometric discrepancy: 0.091

The information below is about IL_4LFB_047

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

4DUY|1|A|G|1061
4DUY|1|A|U|1062
4DUY|1|A|C|1063
*
4DUY|1|A|G|1193
4DUY|1|A|U|1194
4DUY|1|A|C|1195

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

ribosomal protein S3

Chain E

ribosomal protein S5

Chain I

ribosomal protein S9

Chain J

ribosomal protein S10

Chain N

ribosomal protein S14