3D structure

PDB id
4DUY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C
Experimental method
X-RAY DIFFRACTION
Resolution
3.39 Å

Loop

Sequence
GAUG*CUAAUC
Length
10 nucleotides
Bulged bases
4DUY|1|A|U|1257, 4DUY|1|A|A|1280, 4DUY|1|A|U|1281
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4DUY_050 not in the Motif Atlas
Homologous match to IL_4LFB_052
Geometric discrepancy: 0.5065
The information below is about IL_4LFB_052
Detailed Annotation
180 degree turn
Broad Annotation
No text annotation
Motif group
IL_11344.2
Basepair signature
cWW-cSS-L-cWW
Number of instances in this motif group
2

Unit IDs

4DUY|1|A|G|1255
4DUY|1|A|A|1256
4DUY|1|A|U|1257
4DUY|1|A|G|1258
*
4DUY|1|A|C|1277
4DUY|1|A|U|1278
4DUY|1|A|A|1279
4DUY|1|A|A|1280
4DUY|1|A|U|1281
4DUY|1|A|C|1282

Current chains

Chain A
16S rRNA

Nearby chains

Chain C
ribosomal protein S3
Chain J
ribosomal protein S10
Chain N
ribosomal protein S14

Coloring options:


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