IL_4DV0_020

3D structure

PDB id

4DV0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV0_020 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.176

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4DV0|1|A|G|450
4DV0|1|A|A|451
4DV0|1|A|A|452
4DV0|1|A|A|453
4DV0|1|A|C|454
4DV0|1|A|C|455
*
4DV0|1|A|G|477
4DV0|1|A|A|478
4DV0|1|A|C|479
4DV0|1|A|U|480
4DV0|1|A|G|481
4DV0|1|A|A|482
4DV0|1|A|C|483

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

ribosomal protein S16