IL_4DV0_061

3D structure

PDB id

4DV0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

GU(5MC)ACG*CGAAGUC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV0_061 not in the Motif Atlas

Geometric match to IL_6CZR_369

Geometric discrepancy: 0.3985

The information below is about IL_6CZR_369

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71294.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4DV0|1|A|G|1405
4DV0|1|A|U|1406
4DV0|1|A|5MC|1407
4DV0|1|A|A|1408
4DV0|1|A|C|1409
4DV0|1|A|G|1410
*
4DV0|1|A|C|1490
4DV0|1|A|G|1491
4DV0|1|A|A|1492
4DV0|1|A|A|1493
4DV0|1|A|G|1494
4DV0|1|A|U|1495
4DV0|1|A|C|1496

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

ribosomal protein S12