IL_4DV0_068

3D structure

PDB id

4DV0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

4DV0|1|A|G|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV0_068 not in the Motif Atlas

Homologous match to IL_4LFB_064

Geometric discrepancy: 0.1177

The information below is about IL_4LFB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49061.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

6

Unit IDs

4DV0|1|A|C|1440
4DV0|1|A|G|1441
4DV0|1|A|G|1442
4DV0|1|A|G|1443
4DV0|1|A|A|1446
4DV0|1|A|G|1447
*
4DV0|1|A|C|1459
4DV0|1|A|A|1460
4DV0|1|A|G|1461

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

ribosomal protein S20