IL_4DV0_085
3D structure
- PDB id
- 4DV0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.85 Å
Loop
- Sequence
- CGUC*GUCUG
- Length
- 9 nucleotides
- Bulged bases
- 4DV0|1|A|U|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4DV0_085 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.2953
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
4DV0|1|A|C|1060
4DV0|1|A|G|1061
4DV0|1|A|U|1062
4DV0|1|A|C|1063
*
4DV0|1|A|G|1193
4DV0|1|A|U|1194
4DV0|1|A|C|1195
4DV0|1|A|U|1196
4DV0|1|A|G|1197
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- ribosomal protein S3
- Chain E
- ribosomal protein S5
- Chain I
- ribosomal protein S9
- Chain J
- ribosomal protein S10
- Chain N
- ribosomal protein S14
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