IL_4DV1_009

3D structure

PDB id

4DV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

4DV1|1|A|G|129|||A, 4DV1|1|A|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV1_009 not in the Motif Atlas

Homologous match to IL_4LFB_007

Geometric discrepancy: 0.1273

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_33761.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

4DV1|1|A|U|129
4DV1|1|A|G|129|||A
4DV1|1|A|A|130
4DV1|1|A|C|131
*
4DV1|1|A|G|231
4DV1|1|A|G|232

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

ribosomal protein S16

Chain Q

ribosomal protein S17

Chain T

ribosomal protein S20