IL_4DV1_017

3D structure

PDB id

4DV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV1_017 not in the Motif Atlas

Geometric match to IL_4LFB_015

Geometric discrepancy: 0.1092

The information below is about IL_4LFB_015

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

4DV1|1|A|G|371
4DV1|1|A|C|372
4DV1|1|A|A|373
4DV1|1|A|A|374
4DV1|1|A|U|375
*
4DV1|1|A|A|389
4DV1|1|A|C|390

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

ribosomal protein S16