IL_4DV1_036

3D structure

PDB id

4DV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV1_036 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0783

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4DV1|1|A|G|887
4DV1|1|A|G|888
4DV1|1|A|A|889
4DV1|1|A|G|890
4DV1|1|A|U|891
4DV1|1|A|A|892
4DV1|1|A|C|893
4DV1|1|A|G|894
*
4DV1|1|A|U|905
4DV1|1|A|G|906
4DV1|1|A|A|907
4DV1|1|A|A|908
4DV1|1|A|A|909
4DV1|1|A|C|910

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

ribosomal protein S12

Chain Q

ribosomal protein S17