IL_4DV1_075

3D structure

PDB id

4DV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

(5MC)GU(5MC)AC*GAAGUCG

Length

13 nucleotides

Bulged bases

4DV1|1|A|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV1_075 not in the Motif Atlas

Homologous match to IL_6CZR_369

Geometric discrepancy: 0.5859

The information below is about IL_6CZR_369

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71294.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4DV1|1|A|5MC|1404
4DV1|1|A|G|1405
4DV1|1|A|U|1406
4DV1|1|A|5MC|1407
4DV1|1|A|A|1408
4DV1|1|A|C|1409
*
4DV1|1|A|G|1491
4DV1|1|A|A|1492
4DV1|1|A|A|1493
4DV1|1|A|G|1494
4DV1|1|A|U|1495
4DV1|1|A|C|1496
4DV1|1|A|G|1497

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

ribosomal protein S12