IL_4DV2_010

3D structure

PDB id

4DV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

4DV2|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV2_010 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.0742

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

4DV2|1|A|G|148
4DV2|1|A|A|149
4DV2|1|A|C|150
4DV2|1|A|A|151
4DV2|1|A|A|152
4DV2|1|A|C|153
*
4DV2|1|A|G|168
4DV2|1|A|C|169
4DV2|1|A|U|170
4DV2|1|A|A|171
4DV2|1|A|A|172
4DV2|1|A|U|173
4DV2|1|A|C|174

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

ribosomal protein S20