IL_4DV2_015

3D structure

PDB id

4DV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GG*UGGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV2_015 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.0782

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

4DV2|1|A|G|292
4DV2|1|A|G|293
*
4DV2|1|A|U|304
4DV2|1|A|G|305
4DV2|1|A|G|306
4DV2|1|A|C|307
4DV2|1|A|C|308

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

ribosomal protein S12

Chain P

ribosomal protein S16