IL_4DV2_023

3D structure

PDB id

4DV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4DV2|1|A|A|532, 4DV2|1|A|U|534

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV2_023 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.1563

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4DV2|1|A|G|515
4DV2|1|A|PSU|516
4DV2|1|A|G|517
4DV2|1|A|C|518
4DV2|1|A|C|519
4DV2|1|A|A|520
4DV2|1|A|G|521
*
4DV2|1|A|C|528
4DV2|1|A|G|529
4DV2|1|A|G|530
4DV2|1|A|U|531
4DV2|1|A|A|532
4DV2|1|A|A|533
4DV2|1|A|U|534
4DV2|1|A|A|535
4DV2|1|A|C|536

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

ribosomal protein S3

Chain D

ribosomal protein S4

Chain L

ribosomal protein S12