IL_4DV2_032
3D structure
- PDB id
- 4DV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.65 Å
Loop
- Sequence
- GGAAUU*AGGAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4DV2_032 not in the Motif Atlas
- Geometric match to IL_4LFB_030
- Geometric discrepancy: 0.056
- The information below is about IL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04668.2
- Basepair signature
- cWW-cWW-cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
4DV2|1|A|G|673
4DV2|1|A|G|674
4DV2|1|A|A|675
4DV2|1|A|A|676
4DV2|1|A|U|677
4DV2|1|A|U|678
*
4DV2|1|A|A|712
4DV2|1|A|G|713
4DV2|1|A|G|714
4DV2|1|A|A|715
4DV2|1|A|A|716
4DV2|1|A|C|717
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain F
- ribosomal protein S6
- Chain K
- ribosomal protein S11
- Chain R
- ribosomal protein S18
Coloring options: