IL_4DV2_033

3D structure

PDB id

4DV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

4DV2|1|A|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV2_033 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.0727

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4DV2|1|A|G|683
4DV2|1|A|A|684
4DV2|1|A|G|685
4DV2|1|A|U|686
4DV2|1|A|A|687
4DV2|1|A|G|688
*
4DV2|1|A|C|699
4DV2|1|A|G|700
4DV2|1|A|C|701
4DV2|1|A|A|702
4DV2|1|A|G|703
4DV2|1|A|A|704
4DV2|1|A|U|705
4DV2|1|A|A|706
4DV2|1|A|C|707

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

ribosomal protein S11