IL_4DV2_051

3D structure

PDB id

4DV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GUUGC*GGCACUC

Length

12 nucleotides

Bulged bases

4DV2|1|A|U|1125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV2_051 not in the Motif Atlas

Geometric match to IL_4LFB_048

Geometric discrepancy: 0.3404

The information below is about IL_4LFB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85222.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

4DV2|1|A|G|1124
4DV2|1|A|U|1125
4DV2|1|A|U|1126
4DV2|1|A|G|1127
4DV2|1|A|C|1128
*
4DV2|1|A|G|1143
4DV2|1|A|G|1144
4DV2|1|A|C|1145
4DV2|1|A|A|1146
4DV2|1|A|C|1147
4DV2|1|A|U|1148
4DV2|1|A|C|1149

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

ribosomal protein S9

Chain J

ribosomal protein S10