Motif IL_89862.1 Version IL_89862.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 1-11 | 3-5 | 3-9 | 4-10 | 5-10 | 6-9 | 7-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4LFB_048 | 4LFB | 0.6435 | 1 | A | SSU rRNA | G | 1143 | G | 1144 | C | 1145 | A | 1146 | C | 1147 | U | 1148 | C | 1149 | * | G | 1124 | U | 1126 | G | 1127 | C | 1128 | cWW | ncSH | ncWW | ntHS | ncWS | ncWw | cWW |
| 2 | IL_8P9A_302 | 8P9A | 0.0000 | 0 | AR | LSU rRNA | A | 1883 | A | 1884 | U | 1885 | A | 1886 | A | 1887 | U | 1888 | G | 1889 | * | C | 2346 | U | 2347 | A | 2348 | U | 2349 | cWW | tHS | cWW | ||||
| 3 | IL_8OI5_076 | 8OI5 | 0.0839 | 0 | 1 | LSU rRNA | A | 1879 | A | 1880 | U | 1881 | A | 1882 | A | 1883 | U | 1884 | G | 1885 | * | C | 2324 | U | 2325 | A | 2326 | U | 2327 | cWW | tHS | cWW | ||||
| 4 | IL_9AXU_070 | 9AXU | 0.0896 | 0 | 2 | LSU rRNA | A | 1938 | A | 1939 | C | 1940 | A | 1941 | A | 1942 | U | 1943 | G | 1944 | * | C | 2434 | U | 2435 | A | 2436 | U | 2437 | cWW | tHS | cWW | ||||
| 5 | IL_8GLP_302 | 8GLP | 0.3042 | 0 | L5 | LSU rRNA | A | 2832 | A | 2833 | C | 2834 | A | 2835 | A | 2836 | OMU | 2837 | G | 2838 | * | C | 3850 | PSU | 3851 | A | 3852 | PSU | 3853 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAUAAUG*CUAU | 2 |
| GGCACUC*GUUGC | 1 |
| AACAAUG*CUAU | 1 |
| AACAA(OMU)G*C(PSU)A(PSU) | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAAU*UA | 2 |
| GCACU*UUG | 1 |
| ACAAU*UA | 1 |
| ACAA(OMU)*(PSU)A | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-L-tHS-L-R-L-cWW-L
- Heat map statistics
- Min 0.08 | Avg 0.31 | Max 0.75
Coloring options: