IL_4DV2_052
3D structure
- PDB id
- 4DV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.65 Å
Loop
- Sequence
- CCAGCG*CGG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4DV2_052 not in the Motif Atlas
- Geometric match to IL_4LFB_066
- Geometric discrepancy: 0.1889
- The information below is about IL_4LFB_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66997.1
- Basepair signature
- cWW-cWS-L-R-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
4DV2|1|A|C|1128
4DV2|1|A|C|1129
4DV2|1|A|A|1130
4DV2|1|A|G|1131
4DV2|1|A|C|1132
4DV2|1|A|G|1133
*
4DV2|1|A|C|1141
4DV2|1|A|G|1142
4DV2|1|A|G|1143
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain I
- ribosomal protein S9
Coloring options: