IL_4DV2_053

3D structure

PDB id

4DV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CCC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCC,GGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV2_053 not in the Motif Atlas

Geometric match to IL_3R1C_018

Geometric discrepancy: 0.1687

The information below is about IL_3R1C_018

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

4DV2|1|A|C|1161
4DV2|1|A|C|1162
4DV2|1|A|C|1163
*
4DV2|1|A|G|1173
4DV2|1|A|G|1174
4DV2|1|A|G|1175

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

ribosomal protein S2

Chain G

ribosomal protein S7