3D structure

PDB id
4DV2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A
Experimental method
X-RAY DIFFRACTION
Resolution
3.65 Å

Loop

Sequence
GGUC*GACC
Length
8 nucleotides
Bulged bases
None detected
QA status
Self-complementary: GGUC,GACC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4DV2_060 not in the Motif Atlas
Geometric match to IL_3WBM_003
Geometric discrepancy: 0.226
The information below is about IL_3WBM_003
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

4DV2|1|A|G|1311
4DV2|1|A|G|1312
4DV2|1|A|U|1313
4DV2|1|A|C|1314
*
4DV2|1|A|G|1323
4DV2|1|A|A|1324
4DV2|1|A|C|1325
4DV2|1|A|C|1326

Current chains

Chain A
16S rRNA

Nearby chains

Chain M
ribosomal protein S13
Chain S
ribosomal protein S19
Chain U
ribosomal protein THX

Coloring options:


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