IL_4DV2_060
3D structure
- PDB id
- 4DV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.65 Å
Loop
- Sequence
- GGUC*GACC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: GGUC,GACC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4DV2_060 not in the Motif Atlas
- Geometric match to IL_3WBM_003
- Geometric discrepancy: 0.226
- The information below is about IL_3WBM_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
4DV2|1|A|G|1311
4DV2|1|A|G|1312
4DV2|1|A|U|1313
4DV2|1|A|C|1314
*
4DV2|1|A|G|1323
4DV2|1|A|A|1324
4DV2|1|A|C|1325
4DV2|1|A|C|1326
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain M
- ribosomal protein S13
- Chain S
- ribosomal protein S19
- Chain U
- ribosomal protein THX
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