3D structure

PDB id
4DV2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A
Experimental method
X-RAY DIFFRACTION
Resolution
3.65 Å

Loop

Sequence
GU(5MC)ACG*CGAAGUC
Length
13 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4DV2_062 not in the Motif Atlas
Geometric match to IL_6CZR_369
Geometric discrepancy: 0.3736
The information below is about IL_6CZR_369
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_71294.1
Basepair signature
cWW-cWW-L-R-L-R-cWW-cWW
Number of instances in this motif group
3

Unit IDs

4DV2|1|A|G|1405
4DV2|1|A|U|1406
4DV2|1|A|5MC|1407
4DV2|1|A|A|1408
4DV2|1|A|C|1409
4DV2|1|A|G|1410
*
4DV2|1|A|C|1490
4DV2|1|A|G|1491
4DV2|1|A|A|1492
4DV2|1|A|A|1493
4DV2|1|A|G|1494
4DV2|1|A|U|1495
4DV2|1|A|C|1496

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
ribosomal protein S12

Coloring options:


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